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Publications from 2026

  • Reconstritution of a microtubule plus-end tracking system in vitro Article

    Nature, 1100-1105.

    P. Bieling, L. Laan (Liedewij), H. Schek, E.L. Munteanu, L. Sandblad, A.M. Dogterom (Marileen), D. Brunner and T. Surrey

    January 2007
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    Transmission of light through periodic arrays of square holes:from a metallic wire mesh to an array of tiny holes Article

    Phys. Rev. B, 76(Article number: 241102), 1-4.

    J. Bravo-Abad, L. Martin-Moreno, F.J. Garcia-Vidal (Francisco), E. Hendry and J. Gómez Rivas (Jaime)

    January 2007
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    Rembrandt's Simeon's song of praise, 1631 : pictorial devices in the service of spatial illusion Article

    ArtMatters, 19-36.

    P. Noble and A. van Loon

    January 2007
    open access
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    Rubens'oil sketches for the Achilles Series: a focus on the imprimatura layer and drawing material Article

    ArtMatters, 82-89.

    A. Boersma, A. van Loon and J.J. Boon

    January 2007
    open access
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    Changes in appearance: unintentional lightening in stable interiors by philips Wouwerman (1619-1668) Article

    ArtMatters, 103-110.

    J. Verhave, A. van Loon and P. Noble

    January 2007
    open access
  • Effect of urea on the structural dynamics of water Article

    PNAS, 103(49), 18417-18420.

    Y.L.A. Rezus (Yves) and H.J. Bakker (Huib)

    December 2006
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    Molecular studies of organic residues preserved in ancient vessels Dissertation

    T.F.M. Oudemans (Tania)

    November 2006
    open access
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    Spontaneous-emission rates of quantum dots and dyes controlled with photonic crystals Dissertation

    I.S. Nikolaev

    November 2006
    open access
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    From strong field ionization to the generation of attosecond laser pulses Dissertation

    Y.F. Ni (Yongfeng)

    October 2006
    open access
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    Paints quantified : image analytical studies of preparatory grounds used by Van Gogh (De Mayerne [MolArt]; 12) Dissertation

    Beatrice Marino

    October 2006
    open access
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    Protein folding and translocation: single-molecule investigations Dissertation

    Biophysics

    R.G.H. van Leeuwen

    October 2006
    open access
  • Identification of leptomeningeal metastasis-related proteins in cerebrospinal fluid by a combination of MALDI-TOF, MALDI-FTICR and NanoLC-FTICR mass spectrometry Article

    Mol. Cell Proteomics, 5(10 Supplement)

    A. Roempp, L. Dekker, I.M. Taban Barbu, G. Jenster, W. Boogerd, H. Bonfrer, B. Spengler, R.M.A. Heeren (Ron), Peter Sillevis Smitt and Theo M. Luider

    October 2006
  • Physical chemistry: seeds of phase change Article

    Nature

    D. Frenkel

    October 2006
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    High-refractive index particles in counter-propagating optical tweezers: manipulation and forces Dissertation

    A. van der Horst

    September 2006
    open access
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    Tunable plasmon resonances in anisotropic metal nanostructrues Dissertation

    Photonic Materials

    J.J. Penninkhof

    September 2006
    open access
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    Stochastic dynamics in sand and cells Dissertation

    Biochemical Networks

    J.S. van Zon (Jeroen)

    March 2006
    open access
  • What to do when all the seats are taken: a materials scientist considers his options Article

    Nature

    D. Frenkel

    March 2006
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    Reporting highlights of the De Mayerne Programme : research programme on molecular studies in conservation and technical studies in art history Book

    J.J. Boon and E.S.B. Ferreira

    January 2006
  • Combined microscopic analytical techniques as diagnostic tools in the stydy of paint cross-sections: case study of a sample from a 15th century painting "The descent from the cross" by Rogier van der Weyden In Proceedings

    E.S.B. Ferreira, K. Keune and J.J. Boon

    January 2006
  • Hoe wordt materie georganiseerd Book Chapter

    D. Frenkel

    January 2006
  • Evolutionary algorithms in the optimization of dynamic molecular alignment In Proceedings

    O.M. Shir, Ch. Siedschlag, Th. Bäck and M.J.J. Vrakking

    January 2006
  • The relationship between preservation and technique in paintings in the Oranjezaal In Proceedings

    A. van Loon, L. Speleers, E.S.B. Ferreira, K. Keune and J.J. Boon

    January 2006
  • Introduction to colloidal systems In Proceedings

    D. Frenkel

    January 2006
  • Niching in evolution strategies and its application to laser pulse shaping In Proceedings

    O.M. Shir, Ch. Siedschlag, Th. Bäck and M.J.J. Vrakking

    January 2006
  • Ultrafast dynamics of strongly confined water Book Chapter

    A.M. Dokter, S. Woutersen (Sander) and H.J. Bakker (Huib)

    January 2006
  • Waste-recycling Monte Carlo Book Chapter

    D. Frenkel

    January 2006
  • Probing and controlling ultrafast dynamics of a molecular switch In Proceedings

    J. Savolainen (Janne), R. Fanciulli, N. Dijkhuizen and J. Herek

    January 2006
  • The complete-basis-functions parameterization in ES and its application to laser pulse shaping In Proceedings

    O.M. Shir, Th. Bäck, Ch. Siedschlag and M.J.J. Vrakking

    January 2006
  • Instrumental developments in interfacing ESI to FTICR-MS instruments Book Chapter

    R.M.A. Heeren (Ron)

    January 2006
  • Various approaches to Van Gogh technical studies; common grounds? Book Chapter

    E. Hendriks, S. Constantin and Beatrice Marino

    January 2006
  • Processes inside paintings that affect the picture: chemical changes at, near and underneath the paint surface Book Chapter

    J.J. Boon and J.J. Boon

    January 2006
  • Birch bark tar Book Chapter

    A. van Gijn and J.J. Boon

    January 2006
  • Angle-resolved photoelectrons as a probe of strong-field interactions In Proceedings

    M.J.J. Vrakking

    January 2006
  • Analytical report on some archaeological charred residues from Schipluiden Book Chapter

    J.J. Boon

    January 2006
  • Surface preparation of cross sections from traditional and modern paint using the Argon ion milling polishing CP system In Proceedings

    J.J. Boon and S. Asahina

    January 2006
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    Realization of 2-dimensional air-bridge silicon photonic crystals by focused ion beam, milling and nanopolishing In Proceedings

    W.C.L. Hopman, R.M. de Ridder, S.K. Selvaraja, C.G. Bostan, V.J. Gadgil, L.K. Kuipers (Kobus) and A. Driessen (Alfred)

    January 2006
  • Chemical characterisation of thin intermediate layers : case study of a sample from the 15th century painting "The Descent from the Cross" by Rogier van der Weyden Book Chapter

    E.S.B. Ferreira, E.S.B. Ferreira, R. Morrison, K. Keune and J.J. Boon

    January 2006
  • Learning the complete-basis-functions parameterization for the optimization of dynamic molecular alignment by ES In Proceedings

    O.M. Shir, J.N. Kok, Th. Bäck and M.J.J. Vrakking

    January 2006
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    Imaging TOF-SIMS and NANOSIMS studies of barite-celestite particles in grounds from paintings by Van Gogh Article

    e-PS, 41-50.

    Beatrice Marino, J.J. Boon, E. Hendriks, F. Horréard and F. Hillion

    January 2006
    open access
  • Plasmon slot waveguides: towards chip-scale propagation with subwavelength-scale localization Article

    Phys. Rev. B, 73(Article number: 35407), 1-4.

    J.A. Dionne (Jennifer), L.A. Sweatlock, H.A. Atwater (Harry) and A. Polman (Albert)

    January 2006
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    Simulating rare events in equilibrium or nonequilibrium stochastic systems Article

    J. Chem. Phys., 124(Article number: 24102), 1-16.

    R.J. Allen, D. Frenkel and P.R. ten Wolde (Pieter Rein)

    January 2006
  • Flexible simple point-charge water model with improved liquid-state properties Article

    J. Chem. Phys., 124(Article number: 24503), 1-12.

    Y. Wu (Yujie), H.L. Tepper and G.A. Voth

    January 2006
  • Some mathematical properties of Maxwell's equations for macroscopic dielectrics Article

    J. Math. Phys., 47(Article number: 12902), 1-22.

    A. Tip

    January 2006
  • Anisotropic deformation of metallo-dielectric core-shell colloids under MeV ion irradiation Article

    Nucl. Instrum. Methods Phys. Res. B, 523-529.

    J.J. Penninkhof, T. van Dillen, S. Roorda, C. Graf, A. van Blaaderen, A.J. Vredenberg and A. Polman (Albert)

    January 2006
  • Erbium-implanted silica microsphere laser Article

    Nucl. Instrum. Methods Phys. Res. B, 182-185.

    J. Kalkman, A. Polman (Albert), T.J. Kippenberg (Tobias), K.J. Vahala and M.L. Brongersma (Mark)

    January 2006
  • Direct and indirect methods to study attosecond timescale electron dynamics Article

    Phys. Scr., 36-41.

    M.J.J. Vrakking

    January 2006
  • Gold-enhanced biomolecular surface imaging of cells and tissue by SIMS and MALDI mass spectrometry Article

    Anal. Chem., 734-742.

    A.F.M. Altelaar, I. Klinkert, K. Jalink, R.P.J. de Lange, R.A.H. Adan, R.M.A. Heeren (Ron) and S.R. Piersma

    January 2006
  • Dissociative ion-pair formation in collisions of fast potassium atoms with benzene and fluorobenzene Article

    J. Chem. Phys., 124(Article number: 54306), 1-10.

    P. Limão-Vieira, M.C. Moutinho and J.H. Los

    January 2006
  • Direct observation of electron-to-hole energy transfer in CdSe quantum dots Article

    Phys. Rev. Lett., 96(Article number: 57408), 1-4.

    E. Hendry, M. Koeberg, F. Wang, H. Zhang (Hao), C. de Mello Donega, Daniël A. Vanmaekelbergh and M. Bonn (Mischa)

    January 2006
  • The diffusive vesicle supply center model for tip growth in fungal hyphae Article

    J. Theor. Biol., 937-948.

    S.H. Tindemans (Simon), N. Kern and B.M. Mulder (Bela)

    January 2006
  • Colloidal crystals: plenty of room at the top Article

    Nature Mater., 85-86.

    D. Frenkel

    January 2006
  • Excitation of surface plasmons at a SiO2/Ag interface by silicon quantum dots: experiment and theory Article

    Phys. Rev. B, 73(Article number: 75317), 1-8.

    J. Kalkman, H. Gersen, L.K. Kuipers (Kobus) and A. Polman (Albert)

    January 2006
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    The effect of higher-order dispersion on slow light propagation in photonic crystal waveguides Article

    Opt. Express, 14(4), 1658-1672.

    R.J.P. Engelen, Y. Sugimoto, Y. Watanabe, J.P. Korterik, N. Ikeda, N.F. van Hulst, K. Asakawa and L.K. Kuipers (Kobus)

    January 2006
    open access
  • Effect of the coil-globule transition on the free-energy barrier for intrachain crystal nucleation Article

    J. Phys. Chem. B, 3734-3737.

    W. Hu and D. Frenkel

    January 2006
  • Quantitative multiplex CARS spectroscopy in congested spectral regions Article

    J. Phys. Chem. B, 4472-4479.

    H.A. Rinia, M. Bonn (Mischa) and M. Müller (Michiel)

    January 2006
  • Si adhesion interlayer effects in hydrogen passivated Si/W soft X-ray multilayer mirrors Article

    Surf. Sci., 1405-1408.

    M.J.H. Kessels, J. Verhoeven (Jan), F.D. Tichelaar and F. Bijkerk

    January 2006
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    Erbium luminescence imaging of infrared surface plasmon polaritons Article

    Appl. Phys. Lett., 88(Article number: 121121), 1-3.

    E. Verhagen (Ewold), A.L. Tchebotareva and A. Polman (Albert)

    January 2006
    open access
  • Self-assembly of poly(ferrocenyldimethylsilane-b-methyl methacrylate) block copolymers in a selective solvent Article

    Macromolecules, 2306-2315.

    I. Korczagin, M.A. Hempenius, R.G. Fokkink, M.A. Cohen Stuart, M. Al-Hussein, P.H.H. Bomans, P.M. Frederik and G.J. Vancso

    January 2006
  • Lattice-Boltzmann simulation of the sedimentation of charged disks Article

    J. Comput. Phys., 124(Article number: 124903), 1-11.

    F. Capuani, I. Pagonabarraga and D. Frenkel

    January 2006
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    Spectral tunning of plasmon-enhanced silicon quantum dot luminescence Article

    Appl. Phys. Lett., 88(Article number: 131109), 1-3.

    J.S. Biteen, N.S. Lewis, H.A. Atwater (Harry), H. Mertens and A. Polman (Albert)

    January 2006
    open access
  • Microscopical techniques applied to traditional paintings Article

    Infocus Mag., 54-65.

    J.H. Townsend and K. Keune

    January 2006
  • Main-chain smectic liquid-crystalline polymers as randomly disordered systems Article

    Eur. Phys. J. E, 385-388.

    A. Muresan, B.I. Ostrovskii, A. Sánchez-Ferrer, H. Finkelmann and W.H. de Jeu

    January 2006
  • Ultrafast vibrational and structural dynamics of the proton in liquid water Article

    Phys. Rev. Lett., 96(Article number: 138305), 1-4.

    S. Woutersen (Sander) and H.J. Bakker (Huib)

    January 2006
  • Tandem mass spectrometry of intact GroEL-substrate complexes reveals substrate-specific conformational changes in the trans ring Article

    J. Am. Chem. Soc., 4694-4702.

    E. van Duijn, D.A. Simmons, R.H.H. van den Heuvel, P.J. Bakkes, H. van Heerikhuizen, R.M.A. Heeren (Ron), C.V. Robinson, S.M. van der Vies and A.J.R. Heck (Albert)

    January 2006
  • Control of electron localization in molecular dissociation Article

    Science, 246-248.

    M.F. Kling, Ch. Siedschlag, A.J. Verhoef, J.I. Khan, M. Schultze, T. Uphues, Y.F. Ni (Yongfeng), M. Uiberacker, M. Drescher, F. Krausz (Ferenc), et al. M.J.J. Vrakking

    January 2006
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    Fabrication and characterization of erbium-doped toroidal microcavity lasers Article

    J. Appl. Phys., 99(Article number: 83103), 1-9.

    J. Kalkman, A.L. Tchebotareva, A. Polman (Albert), T.J. Kippenberg (Tobias), B. Min and K.J. Vahala

    January 2006
    open access
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    Direct extraction of Raman line-shapes from congested CARS spectra Article

    Opt. Express, 14(8), 3099-3699.

    E.M. Vartiainen, H.A. Rinia, M. Müller (Michiel) and M. Bonn (Mischa)

    January 2006
    open access
  • Photoluminescence quantum efficiency of dense silicon nanocrystal ensembles in SiO2 Article

    Phys. Rev. B, 73(Article number: 132302), 1-4.

    R.J. Walters, J. Kalkman, A. Polman (Albert), H.A. Atwater (Harry) and M.J.A. de Dood (Michiel)

    January 2006
  • Local field effects on electron transport in nanostructured TiO2 revealed by terahertz spectroscopy Article

    Nano Lett., 755-759.

    E. Hendry, M. Koeberg, B. O'Regan and M. Bonn (Mischa)

    January 2006
  • Lattice-Boltzmann simulations of ionic current modulation by DNA translocation Article

    J. Chem. Theory Comput., 495-503.

    S. Reboux, F. Capuani, N. González-Segredo and D. Frenkel

    January 2006
  • Designing ordered DNA-linked nanoparticle assemblies Article

    J. Phys.: Condens. Matter, 567-580.

    D.B. Lukatsky, B.M. Mulder (Bela) and D. Frenkel

    January 2006
  • Laser threshold of Mie resonances Article

    Opt. Lett., 1432-1434.

    K.L. van der Molen, P. Zijlstra (Peter), A. Lagendijk and A.P. Mosk (Allard)

    January 2006
  • Thermal switching of the scattering coefficients of terahertz surface plasmon polaritons impinging on a finite array of subwavelength grooves on semiconductor surfaces Article

    Phys. Rev. B, 73(Article number: 205410), 1-8.

    J.A Sánchez-Gil and J. Gómez Rivas (Jaime)

    January 2006
  • Combined infrared multiphoton dissociation and electron capture dissociation using co-linear and overlapping beams in Fourier transform ion cyclotron resonance mass spectrometry Article

    Rapid Commun. Mass Spectrom., 1838-1844.

    R. Mihalca, Y.E.M. van der Burgt, L.A. McDonnell, M.C. Duursma, J. Cerjak (Iliya), A.J.R. Heck (Albert) and R.M.A. Heeren (Ron)

    January 2006
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    Forward flux sampling-type schemes for simulating rare events: efficiency analysis Article

    J. Chem. Phys., 124(Article number: 194111), 1-17.

    R.J. Allen, D. Frenkel and P.R. ten Wolde (Pieter Rein)

    January 2006
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    Direct imaging of propagation and damping of near-resonance surface plasmon polaritons using cathodoluminescence spectroscopy Article

    Appl. Phys. Lett., 88(Article number: 221111), 1-3.

    J.T. van Wijngaarden, E. Verhagen (Ewold), A. Polman (Albert), C.E. Ross, H.J. Lezec and H.A. Atwater (Harry)

    January 2006
    open access
  • Attosecond electron wave packet interferometry Article

    Nature Phys., 323-326.

    T. Remetter, P. Johnsson, J. Mauritsson, K. Varju, Y.F. Ni (Yongfeng), F. Lépine, E. Gustafsson, M.F. Kling, J.I. Khan, R. Lopez-Martens, et al. K.J. Schafer, M.J.J. Vrakking and A. L'Huillier

    January 2006
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    Translocation boost protein-folding efficiency of double-barreled chaperonins Article

    Biophys. J., 3375-3381.

    I. Coluzza, S.M. van der Vies and D. Frenkel

    January 2006
    open access
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    Near-field characterization of photonic crystal waveguides Article

    Semicond. Sci. Technol., 1-16.

    S.I. Bozhevolnyi (Sergei) and L.K. Kuipers (Kobus)

    January 2006
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    Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data Article

    PLoS Comput. Biol., 2(5, Article number: 58), 467-475.

    F.J. Poelwijk (Frank), D.J. Kiviet and S.J. Tans (Sander)

    January 2006
    open access
  • Dansende moleculen: De beweging van een molecuul over een oppervlak Article

    NTvN, 156-160.

    E.H.G. Backus (Ellen) and M. Bonn (Mischa)

    January 2006
  • SecA supports a constant rate of preprotein translocation Article

    J. Biol. Chem., 15709-15713.

    D. Tomkiewicz, N. Nouwen, R.G.H. van Leeuwen, S.J. Tans (Sander) and A.J.M. Driessen (Arnold)

    January 2006
  • Far-infrared Rydberg-Rydberg transitions in a magnetic field : Deexcitation of antihydrogen atoms Article

    Phys. Rev. A, 73(Article number: 62507), 1-8.

    A. Wetzels, A. Gürtler, L.D. Noordam and F. Robicheaux

    January 2006
  • Coherent control of photochemical and photobiological processes Article

    J. Photochem. Photobiol., A, 180(3)

    J. Herek

    January 2006
  • Pass on the message Article

    Nature Phys., 371-372.

    P.R. ten Wolde (Pieter Rein) and S. Tanase-Nicola

    January 2006
  • Massamicroscopie: moleculaire flitsfoto's van eiwitverdelingen Article

    NTvN, 188-192.

    S.L. Luxembourg (Stefan), A.F.M. Altelaar, L.A. McDonnell and R.M.A. Heeren (Ron)

    January 2006
  • Fragmentation at and above surfaces in SIMS : effects of biomolecular yield enhancing surface modifications Article

    Int. J. Mass Spectrom., 181-192.

    S.L. Luxembourg (Stefan) and R.M.A. Heeren (Ron)

    January 2006
  • Atypical behavior in the electron capture induced dissociation of biologically relevant transition metal ion complexes of the peptide hormone oxytocin Article

    Int. J. Mass Spectrom., 217-224.

    A.J. Kleinnijenhuis, R. Mihalca, R.M.A. Heeren (Ron) and A.J.R. Heck (Albert)

    January 2006
  • Improved temperature stability of Mo/Si multilayers by carbide based diffusion barriers through implantation of low energy CHx+ ions Article

    Thin Solid Films, 26-31.

    L.G.A.M. Alink, R.W.E. van de Kruijs, E. Louis, F. Bijkerk and J. Verhoeven (Jan)

    January 2006
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    Complex response and polariton-like dispersion splitting in periodic metal nanoparticle chains Article

    Phys. Rev. B, 74(Article number: 33402), 1-4.

    A.F. Koenderink (Femius) and A. Polman (Albert)

    January 2006
  • Water confined by lipid bilayers : a multiplex CARS study Article

    Chem. Phys. Lett., 336-341.

    G.W.H. Wurpel and M. Müller (Michiel)

    January 2006
  • Why don't biologists use SIMS? : A critical evaluation of imaging MS Article

    Appl Surf. Sci., 6827-6835.

    R.M.A. Heeren (Ron), L.A. McDonnell, E.R. Amstalden van Hove, S.L. Luxembourg (Stefan), A.F.M. Altelaar and S.R. Piersma

    January 2006
  • The influence of the cholesterol microenvironment in tissue sections on molecular ionization efficiencies and distributions in ToF-SIMS Article

    Appl Surf. Sci., 6702-6705.

    A.F.M. Altelaar, J. van Minnen, R.M.A. Heeren (Ron) and S.R. Piersma

    January 2006
  • Liquid crystallinity in block copolymers films for controlling polymeric nanopatterns Book Chapter

    W.H. de Jeu, Y. Séréro and M. Al-Hussein

    January 2006
  • Assembly dynamics of microtubules at molecular resolution Article

    Nature, 709-712.

    J.W.J. Kerssemakers, E.L. Munteanu, L. Laan (Liedewij), T.L. Noetzel, M.E. Janson (Marcel) and A.M. Dogterom (Marileen)

    January 2006
  • Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks Article

    Phys. Rev. Lett., 97(Article number: 68102), 1-4.

    S. Tanase-Nicola, P.B. Warren and P.R. ten Wolde (Pieter Rein)

    January 2006
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    1µm saturable absorber with recovery time reduced by lattice mismatch Article

    Appl. Phys. Lett., 89(Article number: 71112), 1-3.

    S. Suomalainen, M. Guina, T. Hakulinen, O.G. Okhotnikov, T.G. Euser and S. Marcinkevicius

    January 2006
    open access
  • Adsorption and photochemistry of multilayer bromoform on ice Article

    Surf. Sci., 3337-3344.

    M.L. Grecea, E.H.G. Backus (Ellen), A.W. Kleyn and M. Bonn (Mischa)

    January 2006
  • Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome Article

    PNAS, 12388-12393.

    S. Jun (Suckjoon) and B.M. Mulder (Bela)

    January 2006
  • Evolutionary algorithms in the optimization of dynamic molecular alignment Article

    Opt. Commun., 511-518.

    Ch. Siedschlag, O.M. Shir, Th. Bäck and M.J.J. Vrakking

    January 2006
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