AMOLF Institutional Repository: AMOLF Institutional Repository

Spectroscopic analysis of the oxygenation state of hemoglobin using coherent anti-Stokes Raman scattering Article

J. Biomed. Opt., 11(Article number: 50502), 1-3.

H.A. Rinia, M. Bonn (Mischa), E.M. Vartiainen, C.B. Schaffer and M. Müller (Michiel)

January 2006
D.C. Rapaport, The art of molecular dynamics simulation, second ed., Cambridge University Press, ISBN 0521825687, 549 pages, hardback: Book review Article

Mathem. Biosci., 150-153.

H.L. Tepper

January 2006
Surface molecular view of colloidal gelation Article

PNAS, 13310-13314.

S. Roke (Sylvie), O. Berg, J. Buitenhuis, A. van Blaaderen and M. Bonn (Mischa)

January 2006
A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls Article

Bioinformatics, 7(Article number: 403), 1-16.

M.K. Titulaer, I. Siccama, L. Dekker, Angelique L.C.T. van Rijswijk, R.M.A. Heeren (Ron), Peter Sillevis Smitt and Theo M. Luider

January 2006
Suppression of skin-core structure in injection-molded polymer parts by in situ incorporation of a microfibrillar network Article

Macromolecules, 6771-6775.

G.-J. Zhong, L.-B. Li, E. Mendes, D. Byelov (Dimitry), Q. Fu and Z.-M. Li

January 2006
Dynamic heterogeneity in hydrogen-bonded polymers Article

Phys. Rev. E, 74(Article number: 31804), 1-7.

A. Muresan, J.L.A. Dubbeldam, H. Kautz, M. Monkenbusch, R.P. Sijbesma, P. van der Schoot (Paul) and W.H. de Jeu

January 2006
Angularly resolved electron wave packet interferences Article

J. Phys. B, 3983-3991.

P. Johnsson, J. Mauritsson, T. Remetter, T. Ruchon, Y.F. Ni (Yongfeng), F. Lépine, M.F. Kling, J.I. Khan, K.J. Schafer, M.J.J. Vrakking, et al. A. L'Huillier

January 2006
Size-dependent ion-beam-induced anisotropic plastic deformation at the nanoscale by nonhydrostatic capillary stresses Article

Phys. Rev. B, 74(Article number: 132103), 1-4.

T. van Dillen, E. van der Giessen, P.R. Onck and A. Polman (Albert)

January 2006
De nieuwe fysica van attosecond lasers Article

NTvN, 326-329.

M.F. Kling and M.J.J. Vrakking

January 2006
Simultaneous position and state measurement of Rydberg atoms Article

Eur. Phys. J. D, 13-17.

C.S.E. van Ditzhuijzen, A.F. Koenderink (Femius), L.D. Noordam and H.B. van Linden van den Heuvell

January 2006
Colloidal encounters: a matter of attraction Article

Science, 768-769.

D. Frenkel

January 2006
Exciton polaritons confined in a ZnO nanowire cavity Article

Phys. Rev. Lett., 97(Article number: 147401), 1-4.

L.K. van Vugt, S. Rühle, P. Ravindran, H.C. Gerritsen, L.K. Kuipers (Kobus) and Daniël A. Vanmaekelbergh

January 2006
Strong modification of the nonlinear optical response of metallic subwavelength hole arrays Article

Phys. Rev. Lett., 97(Article number: 146102), 1-4.

J.A.H. van Nieuwstadt, M. Sandtke, R.H. Harmsen, F.B. Segerink, J.C. Prangsma, S. Enoch and L.K. Kuipers (Kobus)

January 2006
Exact results for noise power spectra in linear biochemical reaction networks Article

J. Chem. Phys., 125(Article number: 144904), 1-11.

P.B. Warren, S. Tanase-Nicola and P.R. ten Wolde (Pieter Rein)

January 2006
Orientational dynamics of isotopically diluted H2O and D2O Article

J. Chem. Phys., 125(Article number: 144512), 1-9.

Y.L.A. Rezus (Yves) and H.J. Bakker (Huib)

January 2006
Inhomogeneous dynamics in confined water nanodroplets Article

PNAS, 15355-15358.

A.M. Dokter, S. Woutersen (Sander) and H.J. Bakker (Huib)

January 2006
Isotropic-to-nematic transition in liquid-crystalline heteropolymers: I. Formalism and main-chain liquid-crystalline polymers Article

J. Phys.: Condens. Matter, 9335-9357.

P.P.F. Wessels and B.M. Mulder (Bela)

January 2006
Isotropic-to-nematic transition in liquid-crystalline heteropolymers: II. Side-chain liquid-crystalline polymers Article

J. Phys.: Condens. Matter, 9359-9374.

P.P.F. Wessels and B.M. Mulder (Bela)

January 2006
Electron capture dissociation as structural probe for noncovalent gas-phase protein assemblies Article

Anal. Chem., 7191-7196.

R.B.J. Geels, S.M. van der Vies, A.J.R. Heck (Albert) and R.M.A. Heeren (Ron)

January 2006
Mechanisms of passive ion permeation through lipid bilayers: insights from simulations Article

J. Phys. Chem. B, 21327-21337.

H.L. Tepper and G.A. Voth

January 2006
Depth-resolved nanostructure and refractive index of borosilicate glass doped with Ag nanocrystals Article

Opt. Mater., 326-331.

H. Mertens and A. Polman (Albert)

January 2006
Polarization-selective plasmon-enhanced silicon quantum-dot luminescence Article

Nano Lett., 2622-2625.

H. Mertens, J.S. Biteen, H.A. Atwater (Harry) and A. Polman (Albert)

January 2006
High-frequency dielectric relaxation of liquid crystals: THz time-domain spectroscopy of liquid crystal colloids Article

Opt. Express, 14(23), 11433-11441.

M. Oh-e, H. Yokoyama, M. Koeberg, E. Hendry and M. Bonn (Mischa)

January 2006
Intrinsic intensity fluctuations in random lasers Article

Phys. Rev. A, 74(Article number: 53808), 1-6.

K.L. van der Molen, A.P. Mosk (Allard) and A. Lagendijk

January 2006
Demonstration of an erbium-doped microdisk laser on a silicon chip Article

Phys. Rev. A, 74(Article number: 51802), 1-4.

T.J. Kippenberg (Tobias), J. Kalkman, A. Polman (Albert) and K.J. Vahala

January 2006
Plasmon-enhanced erbium luminescence Article

Appl. Phys. Lett., 89(Article number: 211107), 1-3.

H. Mertens and A. Polman (Albert)

January 2006
Application of the optimized Baxter model to the hard-core attractive Yukawa system Article

J. Chem. Phys., 125(Article number: 194506), 1-9.

P. Prinsen, J.C. Pámies, T. Odijk and D. Frenkel

January 2006
Pump-probe and pump-deplete-probe spectroscopies on carotenoids with N=9-15 conjugated bonds Article

J. Chem. Phys., 125(Article number: 194505), 1-7.

T. Buckup, J. Savolainen (Janne), W. Wohlleben, J. Herek, H. Hashimoto, R.R.B. Correia and M. Motzkus

January 2006
The molecular scanner in microscope mode Article

Rapid Commun. Mass Spectrom., 3435-3442.

S.L. Luxembourg (Stefan), A.R. Vaezaddeh, E.R. Amstalden van Hove, C.G. Zimmermann-Ivol, D.F. Hochstrasser and R.M.A. Heeren (Ron)

January 2006
Resonant diffusive radiation in random multilayered systems Article

Nucl. Instrum. Methods Phys. Res. B, 57-61.

Z.S. Gevorkian and J. Verhoeven (Jan)

January 2006
Exciton polarizability in semiconductor nanocrystals Article

Nature Mater., 861-864.

F. Wang, J. Shan, M.A. Islam, I.P. Herman, M. Bonn (Mischa) and T.F. Heinz

January 2006
Meten aan microbuisjes met moleculaire resolutie Article

NTvN, 388-391.

L. Laan (Liedewij), E.L. Munteanu, J.W.J. Kerssemakers and A.M. Dogterom (Marileen)

January 2006
Switching the dipole moment for 5CB on and off Article

Liq. Cryst., 1359-1371.

S.J. Picken and W.H. de Jeu

January 2006
Transcriptional regulation by competing transcription factor modules Article

PLoS Comput. Biol., 2(12, Article number: 164), 1-9.

R. Hermsen (Rutger), S.J. Tans (Sander) and P.R. ten Wolde (Pieter Rein)

January 2006
Giant optical birefringence in ensembles of semiconductor nanowires Article

Appl. Phys. Lett., 89(Article number: 233117), 1-3.

O.L. Muskens, M.T. Borgström, E.P.A.M. Bakkers (Erik) and J. Gómez Rivas (Jaime)

January 2006
Free carrier photogeneration in polythiophene versus poly(phenylene vinylene) studied with THz spectroscopy Article

Chem. Phys. Lett., 441-445.

E. Hendry, M. Koeberg, J.M. Schins, L.D.A. Siebbeles (Laurens) and M. Bonn (Mischa)

January 2006
Focused ion beam milling of nanocavities in single colloidal particles and self-assembled opals Article

Nanotechnology, 5717-5721.

L.A. Woldering, A.M. Otter, B.H. Husken and W.L. Vos

January 2006
Optically switchable mirrors for surface plasmon polaritons propagating on semiconductor surfaces Article

Phys. Rev. B, 74(Article number: 245324), 1-6.

J. Gómez Rivas (Jaime), J.A Sánchez-Gil, Martin Kuttge, P. Haring Bolivar and H. Kurz

January 2006
Diffusion of transcription factors can drastically enhance the noise in gene expression Article

Biophys. J., 4350-4367.

J.S. van Zon (Jeroen), M.J. Morelli, S. Tanase-Nicola and P.R. ten Wolde (Pieter Rein)

January 2006
Mass microscopy: imaging biomolecules on surfaces Dissertation

S.L. Luxembourg (Stefan)

December 2005
Towards terahertz microscopy Dissertation

Ultrafast Spectroscopy

N.C.J. van der Valk

November 2005
Charge dynamics in novel semiconductors Dissertation

E. Hendry

November 2005
Finding the center reliably: robust patterns of developmental gene expression Article

Phys. Rev. Lett., 95(20, Article number: 208103), 1-4.

M. Howard and P.R. ten Wolde (Pieter Rein)

November 2005
Pushing for power Article

Nature

A. Lagendijk

November 2005
Collective and collisional properties of the rubidium quantum gas Dissertation

C. Buggle

October 2005
Continuum description of the cytoskeleton: ring formation in the cell cortex Article

Phys. Rev. Lett., 95(Article number: 258103), 1-4.

A. Zumdieck, M. Cosentino Lagomarsino (Marco), C. Tanase, K. Kruse, B.M. Mulder (Bela), A.M. Dogterom (Marileen) and F. Jülicher

October 2005
Dissociative recombination of atmospheric ions: towards unravelling the physics behind airglows Dissertation

A. Petrignani

September 2005
Structural analysis of sulfide containing peptides using electron capture dissociation Dissertation

A.J. Kleinnijenhuis

September 2005
Writing with amino acids: designing the folding and binding of model proteins Dissertation

I. Coluzza

June 2005
Binding medium, pigments and metal soaps characterised and localised in paint cross-sections (MolArt; 11) Dissertation

K. Keune

June 2005
Ordering of block copolymers and smectic elastomers Dissertation

D.M. Lambreva

June 2005
The excimer laser ablation of picture varnishes: an evaluation with reference to light-induced deterioration Dissertation

C. Theodorakopoulos

May 2005
Engineering of sufaces and interfaces using low energy ions: Improving the optical quality of multilayered systems for x-ray reflection Dissertation

J. Verhoeven (Jan)

May 2005
Sunlight on atmospheric mineral aerosol and water vapor: modeling the link between laboratory data and remote sensing Dissertation

B. Veihelmann

April 2005
Interfaces in soft x-ray multilayer mirrors Dissertation

M.J.H. Kessels

March 2005
Controlled spontaneous emission in erbium-dopd microphotonic materials Dissertation

Photonic Materials

J. Kalkman

March 2005
Probing the negative permittivity perfect lens at optical frequencies using near-field optics and single molecule detection Article

Opt. Express, 13(5), 1604-1614.

N.F. van Hulst, H. Gersen and L.K. Kuipers (Kobus)

March 2005
Dynamics of smectic membranes as studied by x-ray and neutron scattering Dissertation

Theory of Biomolecular Matter

I. Sikharulidze

February 2005
Membrane tube formation by motor proteins: forces and dynamics Dissertation

G. Koster

January 2005
Purcell factor reduced scattering losses in optical microcavities In Proceedings

T.J. Kippenberg (Tobias), A.L. Tchebotareva, J. Kalkman, A. Polman (Albert) and K.J. Vahala

January 2005
El tratado arte de la pintura de Francisco Pacheco y su influencia en la técnica de ejecucion de las encarnaciones en la escultura alemana del siglo XVIII: primeros resultados obtenidos de análisis avanzados realizados en micromuestras Book Chapter

M. Richter, S. Schäfer and A. van Loon

January 2005
Comparing three PCA-based methods for the 3D visualization of imaging spectroscopy data In Proceedings

A. Broersen, R. van Liere and R.M.A. Heeren (Ron)

January 2005
Polymer crystallization driven by anisotropic interactions Book Chapter

W. Hu and D. Frenkel

January 2005
A study on the oxidative gradient of aged traditional triterpenoid resins using "optimum" photoablation parameters In Proceedings

C. Theodorakopoulos, V. Zafiropulos, C. Fotakis, C. Fotakis, J.J. Boon, J. van der Horst (Jerre), K. Dickmann, K. Dickmann and D. Knapp

January 2005
The Lazurite database : an image-based solution for recording and presenting data from painting studies In Proceedings

N. Eastaugh, V. Walsh and J.J. Boon

January 2005
The deterioration of cadmium sulphide yellow artists' pigments In Proceedings

B. Leone, A. Burnstock, C.R. Jones, P. Hallebeek, K. Keune and J.J. Boon

January 2005
The whitening of oil paints films containing bone black In Proceedings

A. van Loon and J.J. Boon

January 2005
Molecular study of the depth-dependent oxidation and condensation gradients of aged dammar and mastic varnish films assisted by KrF excimer laser ablation In Proceedings

C. Theodorakopoulos, V. Zafiropulos and J.J. Boon

January 2005
Quantitative colour comparison of grounds and paints in paint cross-sections from a selection of paintings from the Paris period by Vincent van Gogh In Proceedings

Beatrice Marino, J.J. Boon and E. Hendriks

January 2005
Microclimate indoor monitoring: damage assessment for cultural heritage preservation In Proceedings

M. Odlyha, N. Wade, Q. Wang (Qianmin), R. Campana, J.M. Slater, M.R. Svendsen, T. Padfield, F.De Santis, V.A. Smith, L. Bullock, et al. J.J. Boon, B. Ormsby

January 2005
Chemical aspects of the binding media of the Oranjezaal ensemble: an insight into 17th centurey Netherlandish materials and methods In Proceedings

E.S.B. Ferreira, J. van der Horst (Jerre) and J.J. Boon

January 2005
Characterization and localization of the oil-binding medium in paint cross-sections using imaging secondary ion mass spectrometry In Proceedings

K. Keune, E.S.B. Ferreira and J.J. Boon

January 2005
Changing properties of the asphalt- and oil-derived components in asphalt-oil paints prepared according to 19th-century recipes In Proceedings

G.M. Languri, R. Boitelle and J.J. Boon

January 2005
Chemical changes in old master paintings II: darkening due to increased transparency as a result of metal soap formation processes In Proceedings

P. Noble, A. van Loon and J.J. Boon

January 2005
Numerical simulations of crystal cucleation in colloids Book Chapter

S.A. Auer and D. Frenkel

January 2005
Improving the surface quality of paint cross-sections for imaging analytical studies with specular reflection FTIR and Static-SIMS In Proceedings

A. van Loon, K. Keune and J.J. Boon

January 2005
SIMS studies of the material aspects in grounds and paints in paintings by van Gogh In Proceedings

Beatrice Marino, K. Keune, E. Hendriks and J.J. Boon

January 2005
Flow-induced mesophases in crystallizable polymers Book Chapter

L. Li (Ling) and W.H. de Jeu

January 2005
The effect of bonding on the fragmentation of small systems In Proceedings

R.D. Thomas, A. Ehlerding, W. Geppert, F. Hellberg, M. Larsson, V. Zhaunerchyk, E. Bahati, M.E. Bannister, C.R. Vane, A. Petrignani, et al. J.B.C. Pettersson

January 2005
DTMS and DTMS/MS study of solid organic residues preserved on ancient vessels In Proceedings

T.F.M. Oudemans (Tania), G.B. Eijkel (Gert) and J.J. Boon

January 2005
Ultrafast vibrational dynamics of rotaxanes In Proceedings

O.F.A. Larsen, W.J. Buma, D.A. Leigh and S. Woutersen (Sander)

January 2005
Photosynthesis, physics of Book Chapter

J. Herek

January 2005
Position- and time-sensitive coincident detection of fragments from the dissociative recombination of O2+ using a single hexanode delay-line detector In Proceedings

F. Österdahl, S. Rosén, V. Bednarska, A. Petrignani, F. Hellberg, M. Larsson and W.J. van der Zande

January 2005
Vibrational dependence in the dissociative recombination of O2+ In Proceedings

A. Petrignani, F. Hellberg, R.D. Thomas, M. Larsson, P.C. Cosby and W.J. van der Zande

January 2005
Identifying and localizing proteinaceous compounds in paint samples using reflextion infrared spectroscopic techniques In Proceedings

A. van Loon and J.J. Boon

January 2005
Imaging studies of lead soap aggregates and their relationship to lead and tin in 15th C lead tin yellow paints from the Sherborne triptych In Proceedings

J.J. Boon, E. Gore, K. Keune and A. Burnstock

January 2005
Vibrationally resolved rate coefficients and branding fractions in the dissociative recombination of O+2 Article

J. Chem. Phys., 122(Article number: 14302), 1-11.

A. Petrignani, W.J. van der Zande, P.C. Cosby, F. Hellberg, R.D. Thomas and M. Larsson

January 2005
Anisotropic plastic deformation by viscous flow in ion tracks Article

Phys. Rev. B, 71(Article number: 24103), 1-12.

T. van Dillen, A. Polman (Albert), P.R. Onck and E. van der Giessen

January 2005
Simulation studies of pore and domain formation in a phospholipid monolayer Article

J. Chem. Phys., 122(Article number: 24704), 1-9.

V. Knecht, M. Müller (Michiel), M. Bonn (Mischa), S.J. Marrink (Sievert) and A.E. Mark

January 2005
Sampling rare switching events in biochemical networks Article

Phys. Rev. Lett., 94(Article number: 18104), 1-4.

R.J. Allen, P.B. Warren and P.R. ten Wolde (Pieter Rein)

January 2005
WWW scattering matrix database for small mineral particles at 441.6 and 632.8nm Article

J. Quant. Spectrosc. Radiat. Transfer, 191-206.

H. Volten, O. Muñoz, J.W. Hovenier, J.F. de Haan, W. Vassen, W.J. van der Zande and L.B.F.M. Waters

January 2005
Coupling of Er ions to surface plasmons on Ag Article

Appl. Phys. Lett., 86(Article number: 41113), 1-3.

J. Kalkman, L.K. Kuipers (Kobus), A. Polman (Albert) and H. Gersen

January 2005
Plasmonics: optics at the nanoscale Article

Mater. Today, 8(1)

A. Polman (Albert) and H.A. Atwater (Harry)

January 2005
Direct molecular imaging of Lymnaea stagnalis nervous tissue at subcellular spatial resolution by mass spectrometry Article

Anal. Chem., 735-741.

A.F.M. Altelaar, J. van Minnen, C.R. Jiménez, R.M.A. Heeren (Ron) and S.R. Piersma

January 2005
Oriented primary crystal nucleation in lamellar diblock copolymer system Article

Faraday Discuss., 253-260.

W. Hu and D. Frenkel

January 2005
Theory of sum-frequency generation spectroscopy of adsorbed molecules using the density matrix method - broadband vibrational sum-frequency generation and applications Article

J. Phys.: Condens. Matter, 201-220.

M. Bonn (Mischa), H. Ueba and M. Wolf

January 2005
Force barriers for membrane tube formation Article

Phys. Rev. Lett., 94(Article number: 68101), 1-4.

G. Koster, A. Cacciuto, I. Derényi, D. Frenkel and A.M. Dogterom (Marileen)

January 2005
Real-Space observation of ultraslow light in photonic crystal waveguides Article

Phys. Rev. Lett., 94(Article number: 73903), 1-4.

H. Gersen, T.J. Karle, R.J.P. Engelen, W. Bogaerts, J.P. Korterik, N.F. van Hulst, T.F. Krauss and L.K. Kuipers (Kobus)

January 2005
Heterodyne and homodyne detection in fluctuating smectic membranes by photon correlation spectroscopy at X-ray and visible wavelengths Article

Physica B, 39-44.

W.H. de Jeu, A. Madsen, I. Sikharulidze and S. Sprunt

January 2005
Subcellular imaging mass sectrometry of brain tissue Article

J. Mass Spectrom., 160-168.

L.A. McDonnell, S.R. Piersma, A.F.M. Altelaar, T.H. Mize, S.L. Luxembourg (Stefan), Peter D.E.M. Verhaert, J. van Minnen and R.M.A. Heeren (Ron)

January 2005

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