AMOLF Institutional Repository: AMOLF Institutional Repository

Magnetic light-matter interactions in a photonic crystal nanocavity Article

Phys. Rev. Lett., 105(12, Article number: 123901), 1-4.

M. Burresi, T. Kampfrath, D. van Oosten, J.C. Prangsma, B.S. Song, S. Noda and L.K. Kuipers (Kobus)

September 2010
Investigation of polymerization mechanisms of poly(n-Buyl Acrylate)s generated in different solvents by LC-ESI-MS2 Article

Macromolecules, 43(17), 7082-7089.

J. Song, J.W. van Velde, L.L.T. Vertommen, L.G.J. van der Ven, R.M.A. Heeren (Ron) and O.F. van den Brink

September 2010
Spatial threshold in amplifying random media Article

Opt. Lett., 35(18), 3063-3065.

R.G.S. El-Dardiry, A.P. Mosk (Allard) and A. Lagendijk

September 2010
Quantitative CARS molecular fingerprinting of single living cells with the use of the maximum entropy method Article

Angew. Chem., Int. Ed., 49(38), 6773-6777.

Masanari Okuno, H. Kano, P. Leproux, V. Couderc, J.P.R. Day, M. Bonn (Mischa) and H. Hamaguchi

September 2010
Effect of feedback on the fidelity of information transmission for time-varying signals Article

Phys. Rev. E, 82(3, Article number: 31914), 1-21.

W.H. de Ronde, F. Tostevin (Filipe) and P.R. ten Wolde (Pieter Rein)

September 2010
Xray tomographic microscopic studies of a resin embedded paint sample from a mechanical failing area in floor tiles of The Art of Painting by Johannes Vermeer (1632-1675) Article

Microsc. Microanal., 16(suppl. 2), 1872-1873.

J.J. Boon, E. Oberthaler, E.S.B. Ferreira, F. Marone and M. Stampanoni

August 2010
Box traps on an atom chip for one-dimensional quantum gases Article

J. Phys. B, 43(15 Sp. Iss. SI, Article number: 155002), 1-10.

J.J.P. van Es, P. Wicke, A.H. van Amerongen, C. Rétif, S. Whitlock and N.J. van Druten

August 2010
Nuclear quantum effects in the reorientation of water Article

J. Phys. Chem. Lett., 1(15), 2316-2321.

F. Paesani, S. Yoo, H.J. Bakker (Huib) and S.S. Xantheas

August 2010
Dynamically reconfigurable directionality of plasmon-based single photon sources Article

Phys. Rev. B, 82(8, Article number: 81402), 1-4.

Y. Chen (Yuntian), P. Lodahl and A.F. Koenderink (Femius)

August 2010
Providing positional information with active transport on dynamic microtubules Article

Biophys. J., 99(3), 726-735.

C. Tischer, P.R. ten Wolde (Pieter Rein) and A.M. Dogterom (Marileen)

August 2010
Shaping a morphogen gradient for positional information Article

Biophys. J., 697-707.

F. He, T. Saunders, Y. Wen, R. Jiao, P.R. ten Wolde (Pieter Rein), M. Howard and J. Ma

August 2010
Bacterial chemotaxis in linear and nonlinear steady microfluidic gradients Article

Nano Lett., 10(9), 3379-3385.

T. Ahmed, T.S. Shimizu (Thomas) and R. Stocker

August 2010
Designing colloidal ground-state patterns using short-range isotropic interactions Article

Phys. Rev. E, 82(Article number: 21404), 1-10.

S.H. Tindemans (Simon) and B.M. Mulder (Bela)

August 2010
Simulation study of micelle formation by bile salts Article

Soft Matter, 6(16), 3815-3825.

A. Vila Verde and D. Frenkel

August 2010
Compact optical switches and modulators based on dispersion engineered photonic crystals Article

IEEE Photonics J., 2(3), 404-414.

L. O'Faolain, D.M. Beggs, T.P. White, T. Kampfrath, L.K. Kuipers (Kobus) and T.F. Krauss

July 2010
Non-linear processes in the interaction of atoms and molecules with intense EUV and X-ray fields from SASE free electron lasers (FELs) Article

J. Mod. Opt., 57(12), 1015-1040.

N. Berrah, J.D. Bozek, J.T. Costello, S. Düsterer, L. Fang, J. Feldhaus, H. Fukuzawa, M. Hoener, Y.H. Jiang, P. Johnsson, et al. M. Meyer, M. Richter, A. Rouzée, A. Rudenko, K. Tiedtke, K. Ueda, M.J.J. Vrakking

July 2010
Attosecond electron spectroscopy using a novel interferometric pump-probe technique Article

Phys. Rev. Lett., 105(Article number: 53001), 1-4.

J. Mauritsson, T. Remetter, M. Swoboda, K. Klünder, A. L'Huillier, K.J. Schafer, O. Ghafur, F. Kelkensberg, W. Siu, P. Johnsson, et al. T. Uphues, M.F. Kling, F. Lépine, F. Ferrari, M. Nisoli

July 2010
Mimicking moth's eyes for photovoltaic applications with tapered GaP nanorods In Proceedings

S.L. Diedenhofen, R. Algra, E.P.A.M. Bakkers (Erik) and J. Gómez Rivas (Jaime)

July 2010
Model for the orientational ordering of the plant microtubule cortical array Article

Phys. Rev. E, 82(Article number: 11911), 1-15.

R.J. Hawkins, S.H. Tindemans (Simon) and B.M. Mulder (Bela)

July 2010
Direct interactions of early and late assembling division proteins in Eschierichia coli cells resolved by FRET Article

Mol. Microbiol., 77(2), 384-398.

S. Alexeeva, T.W.J. Gadella, J. Verheul, G.S. Verhoeven and T. den Blaauwen

July 2010
Characterization of bending losses for curved plasmonic nanowire waveguides Article

Opt. Express, 18(15), 16112-16119.

D.J. Dikken, M. Spasenović, E. Verhagen (Ewold), D. van Oosten and L.K. Kuipers (Kobus)

July 2010
Formation of low charge state ions of synthetic polymers using quaternary ammonium compounds Article

Anal. Chem., 82(13), 5735-5742.

A. Nasioudis, W.F. Joyce, J.W. van Velde, R.M.A. Heeren (Ron) and O.F. van den Brink

July 2010
Statistical fluctuations of transmission in slow light photonic-crystal waveguides Article

Opt. Express, 18(14), 14654-14663.

S. Mazoyer, P. Lalanne (Philippe), J.C. Rodier, J.P. Hugonin, M. Spasenović, L.K. Kuipers (Kobus), D.M. Beggs and T.F. Krauss

July 2010
Negative-index metamaterials : looking into the unit cell Article

Nano Lett., 10(7), 2480-2483.

M. Burresi, D. Diessel, D. van Oosten, S. Linden, M. Wegener (Martin) and L.K. Kuipers (Kobus)

July 2010
Observation of vortices and field correlations in the near-field speckle of a three-dimensional photonic crystal Article

Opt. Lett., 35(12), 2001-2003.

S. Vignolini, M. Burresi, S. Gottardo, L.K. Kuipers (Kobus) and D.S. Wiersma

June 2010
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli Article

Mol. Syst. Biol., 6(Article number: 382), 1-14.

T.S. Shimizu (Thomas), Yuhai Tu and H.C. Berg

June 2010
Electron localization following attosecond molecular photoionization Article

Nature, 465(7299), 763-767.

G. Sansone, F. Kelkensberg, J.F. Pérez-Torres, Felipe Morales, M.F. Kling, W. Siu, O. Ghafur, P. Johnsson, M. Swoboda, E. Benedetti, et al. F. Ferrari, F. Lépine, M. Ivanov, M. Nisoli, M.J.J. Vrakking

June 2010
A concise review of mass spectrometry imaging Article

J. Chromatogr., A, 1217(25), 3946-3954.

E.R. Amstalden van Hove, D.F. Smith (Donald) and R.M.A. Heeren (Ron)

June 2010
Negative refractive index in coaxial plasmon waveguides Article

Opt. Express, 18(12), 12770-12778.

R. de Waele, S.P. Burgos, H.A. Atwater (Harry) and A. Polman (Albert)

June 2010
Molecular restructuring of water and lipids upon the interaction of DNA with lipid monolayers Article

J. Am. Chem. Soc., 132(23), 8037-8047.

R.K. Campen, Thuy T.M. Ngo, M. Sovago, J.-M. Ruysschaert and M. Bonn (Mischa)

June 2010
Label-free imaging of lipophilic bioactive molecules during lipid digestion by multiplex coherent anti-stokes raman scattering microspectroscopy Article

J. Am. Chem. Soc., 132(24), 8433-8439.

J.P.R. Day, G. Rago (Gianluca), K.F. Domke, K.P. Velikov (Krassimir) and M. Bonn (Mischa)

June 2010
Combinatorial gene regulation using auto-regulation Article

PLoS Comput. Biol., 6(6, Article number: 1000813), 1-13.

R. Hermsen (Rutger), B. Ursem and P.R. ten Wolde (Pieter Rein)

June 2010
TOF-Secondary Ion Mass Spectrometry imaging of polymeric scaffolds with surrounding tissue after in vivo implantation Article

Anal. Chem., 82(11), 4337-4343.

L.A. Klerk, P.Y.W. Dankers (Patricia), E.R. Popa, A.W. Bosman, M.E. Sanders, K.A. Reedquist and R.M.A. Heeren (Ron)

June 2010
Light trapping in ultrathin plasmonic solar cells Article

Opt. Express, 18(S2), 237-245.

V.E. Ferry, M.A. Verschuuren (Marc), H.B.T. Li, E. Verhagen (Ewold), R.J. Walters, R.E.I. Schropp (Ruud), H.A. Atwater (Harry) and A. Polman (Albert)

June 2010
Mutual information in time-varying biochemical systems Article

Phys. Rev. E, 81(06, Article number: 61917), 1-15.

F. Tostevin (Filipe) and P.R. ten Wolde (Pieter Rein)

June 2010
Multiple peaks and reciprocal sign epistatis in an empirically determinded genotype-phenotype landscape Article

Chaos, 20(Article number: 26105), 1-7.

A. Dawid, D.J. Kiviet, M. Kogenaru (Manjunatha), M.G.J. de Vos (Marjon) and S.J. Tans (Sander)

June 2010
Carrier dynamics in photovoltaic nanostructures Dissertation

J.J.H. Pijpers

May 2010
Actieve materiaaleigenschappen van de levende cel Article

NTvN, 76(5), 146-150.

G.H. Koenderink (Gijsje) and F.C. MacKintosh (Fred)

May 2010
Structural hierarchy governs fibrin gel mechanics Article

Biophys. J., 98(10), 2281-2289.

I.K. Piechocka, M. Bacabac, M. Potters, F.C. MacKintosh (Fred) and G.H. Koenderink (Gijsje)

May 2010
Electron angular distributions in near-threshold atomic ionization Article

J. Phys. B, 43(9, Article number: 95601), 1-7.

Tatiana Marchenko, H.G. Muller, K.J. Schafer and M.J.J. Vrakking

May 2010
Vibrational Förster transfer to hydrated protons Article

J. Chem. Phys., 132(Article number: 194504), 1-9.

R.L.A. Timmer (Rutger), K.J. Tielrooij and H.J. Bakker (Huib)

May 2010
Macroscopic Maxwell's equations and negative index materials Article

J. Math. Phys., 51(Article number: 52902), 1-28.

B. Gralak and A. Tip

May 2010
Exploiting disorder for perfect focusing Article

Nature Photon., 4(5), 320-322.

I.M. Vellekoop, A. Lagendijk and A.P. Mosk (Allard)

May 2010
Cooperativity in ion hydration Article

Science, 1006-1009.

K.J. Tielrooij, N. Garcia-Araez, M. Bonn (Mischa) and H.J. Bakker (Huib)

May 2010
Ultrasmall mode volume plasmonic nanodisk resonators Article

Nano Lett., 10(5), 1537-1541.

Martin Kuttge, F.J. García de Abajo (Javier) and A. Polman (Albert)

May 2010
A single-layer wide-angle negative-index metamaterial at visible frequencies Article

Nature Mater., 9(5), 407-412.

S.P. Burgos, R. de Waele, A. Polman (Albert) and H.A. Atwater (Harry)

May 2010
On the robustness of the geometrical model for cell wall deposition Article

Bull. Math. Biol., 72(4), 869-895.

F. Diotallevi, B.M. Mulder (Bela) and J. Grasman

May 2010
Mass spectrometric imaging for biomedical tissue analysis Article

Chem. Rev., 110(5), 3237-3277.

K. Chughtai and R.M.A. Heeren (Ron)

May 2010
Experimental studies on the mode structure of random lasers Article

Phys. Rev. A, 81(4, Article number: 43830), 1-8.

R.G.S. El-Dardiry, A.P. Mosk (Allard), O.L. Muskens and A. Lagendijk

April 2010
Ultrafast adiabatic manipulation of slow light in a photonic crystal Article

Phys. Rev. A, 81(4, Article number: 43837), 1-6.

T. Kampfrath, D.M. Beggs, T.P. White, A. Melloni, T.F. Krauss and L.K. Kuipers (Kobus)

April 2010
Numerical and theoretical study of a monodisperse hard-sphere glass former Article

Phys. Rev. E, 81(4, Article number: 40501), 1-4.

P. Charbonneau, A. Ikeda, J.A. van Meel and K. Miyazaki

April 2010
Free-energy-based method for step size detection of processive molecular motors Article

Eur. Phys. J. E, 31(4), 411-417.

B. Bozorgui, K. Shundyak, S.J. Cox and D. Frenkel

April 2010
Nanoscale free-carrier profiling of individual semiconductor nanowires by infrared near-field nanoscopy Article

Nano Lett., 10(4), 1387-1392.

J.M. Stiegler, A.J. Huber, S.L. Diedenhofen, J. Gómez Rivas (Jaime), R. Algra, E.P.A.M. Bakkers (Erik) and R. Hillenbrand

April 2010
SecB a chaperone dedicated to protein translocation Article

Mol. BioSyst., 6(4), 620-627.

P. Bechtluft (Philipp), N. Nouwen, S.J. Tans (Sander) and A.J.M. Driessen (Arnold)

April 2010
(Multi)exciton dynamics and exciton polatizability in colloidal InAs quantum dots Article

J. Phys. Chem. C, 6318-6324.

J.J.H. Pijpers, M.T.W. Milder, C. Delerue and M. Bonn (Mischa)

April 2010
Substrate conformal imprint lithography for nanophotonics Dissertation

Photonic Materials

M.A. Verschuuren (Marc)

March 2010
Coherent control in the presence of disorder Dissertation

P. van der Walle

March 2010
Energy transfer in (bio)molecular systems Dissertation

M.T.W. Milder

March 2010
Mechanical weakness and paint reactivity observed in the paint structure and surface of The Art of Painting by Vermeer Book Chapter

J.J. Boon, E. Oberthaler and E. Oberthaler

March 2010
Die Malkunst von Johannes Vermeer. Geschichte der Restaurierungen, Beobachtungen zum Zustand Book Chapter

E. Oberthaler, E. Oberthaler, J.J. Boon, S. Stanek and M. Griesser

March 2010
Vibrational spectroscopy as a probe of structure and dynamics in liquid water Article

Chem. Rev., 110(3), 1498-1517.

H.J. Bakker (Huib) and J.L. Skinner

March 2010
Vibrational Förster transfer in ice Ih Article

J. Phys. Chem. A, 114(12), 4148-4155.

R.L.A. Timmer (Rutger) and H.J. Bakker (Huib)

March 2010
On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry Article

J. Am. Soc. Mass Spectrom., 21(3), 338-347.

J. Stauber, L. MacAleese (Luke), J. Franck, E. Claude, M. Snel, B. Kükrer-Kaletas, I.M. van der Wiel, M. Wisztorski, I. Fournier and R.M.A. Heeren (Ron)

March 2010
Microtubule length distributions in the presence of protein-induced severing Article

Phys. Rev. E, 81(Article number: 31910), 1-8.

S.H. Tindemans (Simon) and B.M. Mulder (Bela)

March 2010
Light passing through subwavelength apertures Article

Rev. Mod. Phys., 82(1), 729-787.

F.J. Garcia-Vidal (Francisco), L. Martin-Moreno, T.W. Ebbesen and L.K. Kuipers (Kobus)

March 2010
Tight hydrophobic contacts with the SecB chaperone prevent folding of substrate proteins Article

Biochemistry, 49(11), 2380-2388.

P. Bechtluft (Philipp), A. Kedrov (Alexej), D.-J. Slotboom, N. Nouwen, S.J. Tans (Sander) and A.J.M. Driessen (Arnold)

March 2010
Direct observation of size-fractionation during colloidal crystallization Article

J. Phys.: Condens. Matter, 22(10, Article number: 104111), 1-5.

N. Geerts, S. Jahn and E. Eiser

March 2010
Andersonlokalisatie : gefragmenteerd onderzoek aan een universeel verschijnseleen Article

NTvN, 76(3), 70-73.

S. Faez (Sanli)

March 2010
Carrier multiplication in bulk and nanocrystalline semiconductors : Mechanism, efficiency, and interest for solar cells Article

Phys. Rev. B, 81(Article number: 125306), 1-6.

C. Delerue, G. Allan, J.J.H. Pijpers and M. Bonn (Mischa)

March 2010
Long range surface polaritons supported by chalcogenide thin films Article

Appl. Phys. Lett., 96(11, Article number: 113108), 1-3.

C. Arnold, Y. Zhang and J. Gómez Rivas (Jaime)

March 2010
Scattering efficiency and near field enhancement of active semiconductor plasmonic antennas at terahertz frequencies Article

Opt. Express, 18(3), 2797-2807.

V. Giannini, A. Berrier, St.A. Maier, J.A Sánchez-Gil and J. Gómez Rivas (Jaime)

February 2010
MALDI techniques in mass spectrometry imaging Book Chapter

R.M.A. Heeren (Ron)

February 2010
C60+ secondary ion microscopy using a delay line detector Article

Anal. Chem., 82(3), 801-807.

L.A. Klerk, N. P. Lockyer, A.V. Kharchenko, L. MacAleese (Luke), P.Y.W. Dankers (Patricia), J.C. Vickerman and R.M.A. Heeren (Ron)

February 2010
Direct observation of proton transfer in ice Ih using femtosecond spectroscopy Article

J. Phys. Chem. A, 114(5), 2091-2101.

R.L.A. Timmer (Rutger), M.J. Cox and H.J. Bakker (Huib)

February 2010
Modified reflection in birefringent layers of core-shell semiconductor nanowires Article

Semicond. Sci. Technol., 25(2, Article number: 24008), 1-5.

S.L. Diedenhofen and J. Gómez Rivas (Jaime)

February 2010
Survival of the aligned : ordering of the plant cortical microtubule array Article

Phys. Rev. Lett., 104(Article number: 58103), 1-4.

S.H. Tindemans (Simon), R.J. Hawkins and B.M. Mulder (Bela)

February 2010
Plasmonics for improved photovoltaic devices Article

Nature Mater., 9(3), 205-213.

H.A. Atwater (Harry) and A. Polman (Albert)

February 2010
Flying colloidal carpets Article

Soft Matter, 6(3), 664-669.

N. Geerts and E. Eiser

February 2010
Ultrafast surface vibrational dynamics Article

Surf. Sci. Rep., 65(2), 45-66.

H. Arnolds and M. Bonn (Mischa)

February 2010
On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics Article

Rapid Commun. Mass Spectrom., 24(2), 239-241.

I.M. Taban Barbu, D.F. Smith (Donald), B. van Breukelen, Y.E.M. van der Burgt, M.C. Duursma, A.J.R. Heck (Albert), R.M.A. Heeren (Ron) and J. Krijgsveld

February 2010
Comparison of particle-in-cell simulations with experimentally observed frequency shifts between ions of the same mass-to-charge in fourier transform ion cyclotron resonance mass spectrometry Article

J. Am. Soc. Mass Spectrom., 21(2), 203-208.

F.E. Leach III, A.V. Kharchenko, R.M.A. Heeren (Ron), E.N. Nikolaev and I.J. Amster

February 2010
Spatio-temporal correlations can drastically change the response of a MAPK pathway Article

PNAS, 107(6), 2473-2478.

K. Takahashi (Koichi), S. Tanase-Nicola and P.R. ten Wolde (Pieter Rein)

February 2010
Cell structure and dynamics Article

Curr. Opin. Cell Biol., 22(1), 1-3.

A. Desai and A.M. Dogterom (Marileen)

February 2010
Molecular reorientation and transport in liquid water and ice Dissertation

Ultrafast Spectroscopy

R.L.A. Timmer (Rutger)

January 2010
Protein incorporation in giant lipid vesicles under physiological conditions Article

ChemBioChem, 175-179.

P.M. Shaklee, S. Semrau (Stefan), M. Malkus, S. Kubick, A.M. Dogterom (Marileen) and T. Schmidt

January 2010
Increase of group delay and nonlinear effects with hole shape in subwavelength hole arrays Article

New J. Phys., 12(Article number: 13005), 1-10.

J.C. Prangsma, D. van Oosten and L.K. Kuipers (Kobus)

January 2010
Nonprocessive motor dynamics at the microtubule membrane tube interface Article

Biophys. J., 98(1), 93-100.

P.M. Shaklee, L. Bourel-Bonnet, A.M. Dogterom (Marileen) and T. Schmidt

January 2010
Water-water interfaces In Proceedings

E.M. Blokhuis, N.J.H. Boon, H.T.M. van der Ende, Z. Krumer, B. Nienhuis, R.H.H.G. van Roij, M.C. Schaafsma and R.H. Tromp

January 2010
Protecting high frequency IC's from electrostatic discharge In Proceedings

U. Ebert, J.W.M. Frenken, H. van der Graaf (Harry), N. Hermosa, S. Hofmann, G. Kroesen, C. Li, D. Makogon, M. Ranjan, P. Steeneken, et al. Olaf Wunnicke

January 2010
Nobelprijs natuurkunde 2009 voor glasvezelcommunicatie Book Chapter

A. Polman (Albert)

January 2010
Alignment and orientation of hexapole state-selected molecules Book Chapter

A. Rouzée, A. Gijsbertsen (Arjan) and M.J.J. Vrakking

January 2010
In vitro assays to study force generation at dynamic microtubule ends Book Chapter

L. Laan (Liedewij) and A.M. Dogterom (Marileen)

January 2010
Mechanical properties of living cells : on mechanosensing and microgravity Book Chapter

R.G. Bacabac, D. Mizuno and G.H. Koenderink (Gijsje)

January 2010
Surface femtochemistry Book Chapter

E.H.G. Backus (Ellen) and M. Bonn (Mischa)

January 2010
A silicon-based electrical source of surface plasmon polaritons Article

Nature Mater., 21-25.

R.J. Walters, R.V.A. van Loon, I. Brunets, J. Schmitz and A. Polman (Albert)

January 2010
Formation of Si/SiC multilayers by low-energy ion implantation and thermal annealing Article

Nucl. Instrum. Methods Phys. Res. B, 268(6), 560-567.

S. Dobrovolskiy, A.E. Yakshin, F.D. Tichelaar, J. Verhoeven (Jan), E. Louis and F. Bijkerk

January 2010
Imaging mass spectrometry using a delay-line detector Article

Eur. J. Mass Spectrom., 16(1), 35-45.

M. Froesch, S.L. Luxembourg (Stefan), D. Verheijde (Duncan) and R.M.A. Heeren (Ron)

January 2010
Beobachtungen zur fragilen Struktur und zu den chemischen Prozessen in den Schichten und an der Oberfläche des Gemäldes "Die Malkunst" von Vermeer Book Chapter

J.J. Boon, E. Oberthaler and E. Oberthaler

January 2010
The Art of Painting by Johannes Vermeer. History of treatments and observations on the present condition Book Chapter

E. Oberthaler, E. Oberthaler, J.J. Boon, S. Stanek and M. Griesser

January 2010
Nanohole chains for directional and localized surface plasmon excitation Article

Nano Lett., 10(1), 286-290.

D. van Oosten, M. Spasenović and L.K. Kuipers (Kobus)

January 2010

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